From: Michael R. Crusoe <crusoe@debian.org>
Subject: fix a typo
Forwarded: https://github.com/EddyRivasLab/hmmer/pull/217

--- hmmer.orig/easel/esl_ratematrix.c
+++ hmmer/easel/esl_ratematrix.c
@@ -398,7 +398,7 @@
  *
  * Args:      Q     - rate matrix to normalize
  *            pi    - stationary residue frequencies
- *            unit  - expected subsitution rate per dt 
+ *            unit  - expected substitution rate per dt 
  *                    (1.0 = substitutions/site; 0.01 = PAMs)
  *
  * Returns:   <eslOK> on success, and matrix Q is rescaled.
--- hmmer.orig/easel/esl_ratematrix.tex
+++ hmmer/easel/esl_ratematrix.tex
@@ -1,3 +1,3 @@
 The \eslmod{ratematrix} module implements continuous-time Markov
-evolutionary models of residue subsitution.
+evolutionary models of residue substitution.
 
--- hmmer.orig/easel/miniapps/esl-alimask.c
+++ hmmer/easel/miniapps/esl-alimask.c
@@ -169,7 +169,7 @@
       puts("\n  Only one usage listed above can be used per execution with the exception of");
       puts("  -p and -g, which can be used in combination with each other.\n");
       puts("  With -t, <coords> is a string that specifies positive integer start and end");
-      puts("  coordinates seperated by any nonnumeric, nonspace character(s).");
+      puts("  coordinates separated by any nonnumeric, nonspace character(s).");
       puts("  For example, \"23..100\" or \"23/100\" or \"23-100\" all specify that columns");
       puts("  23 to 100 be kept and all other columns be removed. Additionally, to retrieve");
       puts("  all columns from a position to the end, omit the end coord; \"23:\" will work.");
