APBS  1.5
vcsm.c File Reference

Class Vcsm methods. More...

#include "vcsm.h"
Include dependency graph for vcsm.c:

Go to the source code of this file.

Functions

VPUBLIC ValistVcsm_getValist (Vcsm *thee)
 Get atom list. More...
 
VPUBLIC int Vcsm_getNumberAtoms (Vcsm *thee, int isimp)
 Get number of atoms associated with a simplex. More...
 
VPUBLIC VatomVcsm_getAtom (Vcsm *thee, int iatom, int isimp)
 Get particular atom associated with a simplex. More...
 
VPUBLIC int Vcsm_getAtomIndex (Vcsm *thee, int iatom, int isimp)
 Get ID of particular atom in a simplex. More...
 
VPUBLIC int Vcsm_getNumberSimplices (Vcsm *thee, int iatom)
 Get number of simplices associated with an atom. More...
 
VPUBLIC SS * Vcsm_getSimplex (Vcsm *thee, int isimp, int iatom)
 Get particular simplex associated with an atom. More...
 
VPUBLIC int Vcsm_getSimplexIndex (Vcsm *thee, int isimp, int iatom)
 Get index particular simplex associated with an atom. More...
 
VPUBLIC unsigned long int Vcsm_memChk (Vcsm *thee)
 Return the memory used by this structure (and its contents) in bytes. More...
 
VPUBLIC VcsmVcsm_ctor (Valist *alist, Gem *gm)
 Construct Vcsm object. More...
 
VPUBLIC int Vcsm_ctor2 (Vcsm *thee, Valist *alist, Gem *gm)
 FORTRAN stub to construct Vcsm object. More...
 
VPUBLIC void Vcsm_init (Vcsm *thee)
 Initialize charge-simplex map with mesh and atom data. More...
 
VPUBLIC void Vcsm_dtor (Vcsm **thee)
 Destroy Vcsm object. More...
 
VPUBLIC void Vcsm_dtor2 (Vcsm *thee)
 FORTRAN stub to destroy Vcsm object. More...
 
VPUBLIC int Vcsm_update (Vcsm *thee, SS **simps, int num)
 Update the charge-simplex and simplex-charge maps after refinement. More...
 

Detailed Description

Class Vcsm methods.

Author
Nathan Baker
Version
$Id$
Attention
*
* APBS -- Adaptive Poisson-Boltzmann Solver
*
*  Nathan A. Baker (nathan.baker@pnnl.gov)
*  Pacific Northwest National Laboratory
*
*  Additional contributing authors listed in the code documentation.
*
* Copyright (c) 2010-2014 Battelle Memorial Institute. Developed at the
* Pacific Northwest National Laboratory, operated by Battelle Memorial
* Institute, Pacific Northwest Division for the U.S. Department of Energy.
*
* Portions Copyright (c) 2002-2010, Washington University in St. Louis.
* Portions Copyright (c) 2002-2010, Nathan A. Baker.
* Portions Copyright (c) 1999-2002, The Regents of the University of
* California.
* Portions Copyright (c) 1995, Michael Holst.
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice, this
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*
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Definition in file vcsm.c.