APBS  1.5
pbsamparm.c File Reference

Class PBSAMparm methods. More...

#include "pbsamparm.h"
Include dependency graph for pbsamparm.c:

Go to the source code of this file.

Functions

VPUBLIC PBSAMparmPBSAMparm_ctor (PBSAMparm_CalcType type)
 Construct PBSAMparm object. More...
 
VPUBLIC Vrc_Codes PBSAMparm_ctor2 (PBSAMparm *thee, PBSAMparm_CalcType type)
 FORTRAN stub to construct PBSAMparm object ?????????!!!!!!! More...
 
VPUBLIC void PBSAMparm_dtor (PBSAMparm **thee)
 Object destructor. More...
 
VPUBLIC void PBSAMparm_dtor2 (PBSAMparm *thee)
 FORTRAN stub for object destructor ?????????!!!!!!!!!!!! More...
 
VPUBLIC Vrc_Codes PBSAMparm_check (PBSAMparm *thee)
 Consistency check for parameter values stored in object. More...
 
VPUBLIC void PBSAMparm_copy (PBSAMparm *thee, PBSAMparm *parm)
 copy PBSAMparm object int thee. More...
 
VPRIVATE Vrc_Codes PBSAMparm_parseSurf (PBSAMparm *thee, Vio *sock)
 Find vertex files for each molecule and save them. More...
 
VPRIVATE Vrc_Codes PBSAMparm_parseMSMS (PBSAMparm *thee, Vio *sock)
 Find msms flag for if MSMS is to be run. More...
 
VPRIVATE Vrc_Codes PBSAMparm_parseImat (PBSAMparm *thee, Vio *sock)
 Find IMAT files for each molecule and save them. More...
 
VPRIVATE Vrc_Codes PBSAMparm_parseExp (PBSAMparm *thee, Vio *sock)
 Find expansion files for each molecule and save them. More...
 
VPRIVATE Vrc_Codes PBSAMparm_parseTolsp (PBSAMparm *thee, Vio *sock)
 Find sphere tolerance for coarse-graining. More...
 
VPUBLIC Vrc_Codes PBSAMparm_parseToken (PBSAMparm *thee, char tok[VMAX_BUFSIZE], Vio *sock)
 Parse an MG keyword from an input file. More...
 

Detailed Description

Class PBSAMparm methods.

Author
Andrew Stevens
Version
$Id$
Attention
*
* APBS -- Adaptive Poisson-Boltzmann Solver
*
*  Nathan A. Baker (nathan.baker@pnnl.gov)
*  Pacific Northwest National Laboratory
*
*  Additional contributing authors listed in the code documentation.
*
* Copyright (c) 2010-2014 Battelle Memorial Institute. Developed at the
* Pacific Northwest National Laboratory, operated by Battelle Memorial
* Institute, Pacific Northwest Division for the U.S. Department of Energy.
*
* Portions Copyright (c) 2002-2010, Washington University in St. Louis.
* Portions Copyright (c) 2002-2010, Nathan A. Baker.
* Portions Copyright (c) 1999-2002, The Regents of the University of
* California.
* Portions Copyright (c) 1995, Michael Holst.
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright notice, this
* list of conditions and the following disclaimer.
*
* Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* Neither the name of the developer nor the names of its contributors may be
* used to endorse or promote products derived from this software without
* specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
* THE POSSIBILITY OF SUCH DAMAGE.
*
* 

Definition in file pbsamparm.c.