OpenMS  2.5.0
UTILProteomicsLFQ Member List

This is the complete list of members for UTILProteomicsLFQ, including all inherited members.

align_(vector< FeatureMap > &feature_maps, vector< TransformationDescription > &transformations)UTILProteomicsLFQinlineprotected
alignAndLink_(vector< FeatureMap > &feature_maps, ConsensusMap &consensus_fraction, vector< TransformationDescription > &transformations, const double median_fwhm)UTILProteomicsLFQinlineprotected
calculateSeeds_(const MSExperiment &ms_centroided, FeatureMap &seeds, double median_fwhm)UTILProteomicsLFQinlineprotected
centroidAndCorrectPrecursors_(const String &mz_file, MSExperiment &ms_centroided)UTILProteomicsLFQinlineprotected
estimateMedianChromatographicFWHM_(MSExperiment &ms_centroided)UTILProteomicsLFQinlineprotected
getPeptideOccurrence_(const ConsensusMap &cons)UTILProteomicsLFQinlineprotected
link_(vector< FeatureMap > &feature_maps, double median_fwhm, double max_alignment_diff, ConsensusMap &consensus_fraction)UTILProteomicsLFQinlineprotected
main_(int, const char **) overrideUTILProteomicsLFQinlineprotected
mapId2MzMLs_(const map< String, String > &m2i)UTILProteomicsLFQinlineprotected
mapMzML2Ids_(StringList &in, StringList &in_ids)UTILProteomicsLFQinlineprotected
quantifyFraction_(const pair< unsigned int, std::vector< String > > &ms_files, const map< String, String > &mzfile2idfile, double median_fwhm, const multimap< Size, PeptideIdentification > &transfered_ids, ConsensusMap &consensus_fraction, vector< TransformationDescription > &transformations, double &max_alignment_diff, set< String > &fixed_modifications, set< String > &variable_modifications)UTILProteomicsLFQinlineprotected
recalibrateMasses_(MSExperiment &ms_centroided, vector< PeptideIdentification > &peptide_ids, const String &id_file_abs_path)UTILProteomicsLFQinlineprotected
registerOptionsAndFlags_() overrideUTILProteomicsLFQinlineprotected
transferIDsBetweenSameFraction_(const ConsensusMap &consensus_fraction, Size min_occurrence=3)UTILProteomicsLFQinlineprotected
transform_(vector< FeatureMap > &feature_maps, vector< TransformationDescription > &transformations)UTILProteomicsLFQinlineprotected
UTILProteomicsLFQ()UTILProteomicsLFQinline