OpenMS
2.5.0
- a -
align_() :
UTILProteomicsLFQ
alignAndLink_() :
UTILProteomicsLFQ
- c -
calculateAndFilterFDR_() :
NucleicAcidSearchEngine
calculateDecompositionWeightsIsotopicPatterns() :
MetaProSIPDecomposition
calculateIsotopePatternsFor13CRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor13CRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor15NRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor15NRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor18ORange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor18ORangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor2HRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor2HRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculatePrecursorMass_() :
NucleicAcidSearchEngine
calculateSeeds_() :
UTILProteomicsLFQ
centroidAndCorrectPrecursors_() :
UTILProteomicsLFQ
checkExtremePSMScores_() :
Epifany
checkRDependencies() :
RIntegration
clusterSIPPeptides() :
MetaProSIPClustering
convertPSMScores_() :
Epifany
correlateXICsToMono() :
MetaProSIPXICExtraction
createBinnedPeptideRIAData_() :
MetaProSIPReporting
createCSVReport() :
MetaProSIPReporting
createPeptideCentricCSVReport() :
MetaProSIPReporting
createQualityReport() :
MetaProSIPReporting
- d -
deisotopeAndSingleChargeMSSpectrum_() :
NucleicAcidSearchEngine
- e -
Epifany() :
Epifany
estimateMedianChromatographicFWHM_() :
UTILProteomicsLFQ
extractXICs() :
MetaProSIPXICExtraction
extractXICsOfIsotopeTraces() :
MetaProSIPXICExtraction
- g -
generateLFQInput_() :
NucleicAcidSearchEngine
getArchAsString() :
OpenMSOSInfo
getHighPoints() :
MetaProSIPInterpolation
getModifications_() :
NucleicAcidSearchEngine
getNumberOfLabelingElements() :
MetaProSIPDecomposition
getOSAsString() :
OpenMSOSInfo
getPeptideOccurrence_() :
UTILProteomicsLFQ
getRIAClusterCenter() :
MetaProSIPClustering
getSubsectionDefaults_() :
Epifany
- h -
HasInvalidLength() :
NucleicAcidSearchEngine::HasInvalidLength
- l -
link_() :
UTILProteomicsLFQ
- m -
main_() :
Epifany
,
NucleicAcidSearchEngine
,
TOPPGNPSExport
,
UTILProteomicsLFQ
mapId2MzMLs_() :
UTILProteomicsLFQ
mapMzML2Ids_() :
UTILProteomicsLFQ
- n -
NucleicAcidSearchEngine() :
NucleicAcidSearchEngine
- o -
OpenMSOSInfo() :
OpenMSOSInfo
operator()() :
NucleicAcidSearchEngine::HasInvalidLength
,
RIALess
,
SequenceLess
,
SizeLess
- p -
parseAdduct_() :
NucleicAcidSearchEngine
plotFilteredSpectra() :
MetaProSIPReporting
plotHeatMap() :
MetaProSIPReporting
plotScoresAndWeights() :
MetaProSIPReporting
postProcessHits_() :
NucleicAcidSearchEngine
PrecursorInfo() :
NucleicAcidSearchEngine::PrecursorInfo
preprocessSpectra_() :
NucleicAcidSearchEngine
- q -
quantifyFraction_() :
UTILProteomicsLFQ
- r -
recalibrateMasses_() :
UTILProteomicsLFQ
registerIDMetaData_() :
NucleicAcidSearchEngine
registerOptionsAndFlags_() :
Epifany
,
NucleicAcidSearchEngine
,
TOPPGNPSExport
,
UTILProteomicsLFQ
removeExtremeValues_() :
Epifany
resolveAmbiguousMods_() :
NucleicAcidSearchEngine
- t -
TOPPGNPSExport() :
TOPPGNPSExport
transferIDsBetweenSameFraction_() :
UTILProteomicsLFQ
transform_() :
UTILProteomicsLFQ
- u -
UTILProteomicsLFQ() :
UTILProteomicsLFQ
- w -
writeHTML() :
MetaProSIPReporting
Generated on Tue Feb 25 2020 00:00:00 for OpenMS by
1.8.17