Package Bio :: Package expressions :: Package blast :: Module wublast
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Module Bio.expressions.blast.wublast

Function Summary
  main(outf)

Variable Summary
Group blastn = <Martel.Expression.Group instance at 0x40f98fcc...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0x40f...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identities = <Martel.Expression.Seq instance at 0...
Seq blastn_score = <Martel.Expression.Seq instance at 0x40ef...
Seq blastn_strand = <Martel.Expression.Seq instance at 0x40f...
Group blastp = <Martel.Expression.Group instance at 0x40f7858c...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0x40f...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_score = <Martel.Expression.Seq instance at 0x40ef...
Group blastx = <Martel.Expression.Group instance at 0x40fc508c...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0x40f...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastx_identities = <Martel.Expression.Seq instance at 0...
Seq blastx_score = <Martel.Expression.Seq instance at 0x40ef...
Seq blastx_strand = <Martel.Expression.Seq instance at 0x40f...
Seq blastx_table_entry = <Martel.Expression.Seq instance at ...
Seq blastx_to_database = <Martel.Expression.Seq instance at ...
Seq ending = <Martel.Expression.Seq instance at 0x40f458ac>
Seq ending_start = <Martel.Expression.Seq instance at 0x40f1...
Group format = <Martel.Expression.Group instance at 0x40f556ac...
Group header = <Martel.Expression.Group instance at 0x40f057cc...
Seq hit_descr = <Martel.Expression.Seq instance at 0x40e4880...
Seq hit_length = <Martel.Expression.Seq instance at 0x40e484...
Seq identities = <Martel.Expression.Seq instance at 0x40f05f...
MaxRepeat parameters = <Martel.Expression.MaxRepeat instance at 0x...
Seq query_database = <Martel.Expression.Seq instance at 0x40...
Seq spaces_line = <Martel.Expression.Seq instance at 0x40e7a...
Seq statistics = <Martel.Expression.Seq instance at 0x40f458...
Seq table_entry = <Martel.Expression.Seq instance at 0x40efa...
Group tblastn = <Martel.Expression.Group instance at 0x40fe65c...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_identities = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0x40e...
Seq tblastn_strand = <Martel.Expression.Seq instance at 0x40...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq timestamp = <Martel.Expression.Seq instance at 0x40f40b0...
Seq to_table = <Martel.Expression.Seq instance at 0x40f0cc8c...
Seq wublast_version = <Martel.Expression.Seq instance at 0x4...

Variable Details

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40f98fcc>                       

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e6cfac>                         

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f458ec>                         

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f119ac>                         

blastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f1196c>                         

blastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40effe8c>                         

blastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f05f0c>                         

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40f7858c>                       

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f10ccc>                         

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f458cc>                         

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f053ac>                         

blastp_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40effe8c>                         

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40fc508c>                       

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40eeff4c>                         

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f4590c>                         

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f16e0c>                         

blastx_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f16d0c>                         

blastx_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40effe8c>                         

blastx_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f05f0c>                         

blastx_table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f11e0c>                         

blastx_to_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f1632c>                         

ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f458ac>                         

ending_start

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f1fa2c>                         

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40f556ac>                       

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40f057cc>                       

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e4880c>                         

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e4844c>                         

identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f05fec>                         

parameters

Type:
MaxRepeat
Value:
<Martel.Expression.MaxRepeat instance at 0x40f1fb0c>                   

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f0cbac>                         

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e7a80c>                         

statistics

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f4588c>                         

table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40efa0ac>                         

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40fe65cc>                       

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f0c5cc>                         

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f1f78c>                         

tblastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f1f74c>                         

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40effe8c>                         

tblastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f16e4c>                         

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f0c76c>                         

timestamp

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f40b0c>                         

to_table

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40f0cc8c>                         

wublast_version

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e6c54c>                         

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