Package Bio :: Package expressions :: Package blast :: Module ncbiblast
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Module Bio.expressions.blast.ncbiblast

Function Summary
  float_param(name)
  float_stat(name)
  int_param(name, signed, comma)
  int_stat(name, signed, comma)
  Number(name, attrs)

Variable Summary
Seq a_info = <Martel.Expression.Seq instance at 0x40e8208c>
Group alignment = <Martel.Expression.Group instance at 0x40e5c...
Alt blast_filter = <Martel.Expression.Alt instance at 0x40e6...
Group blastn = <Martel.Expression.Group instance at 0x40ea02ac...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0x40e...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identical = <Martel.Expression.Seq instance at 0x...
Group blastp = <Martel.Expression.Group instance at 0x40ebcfcc...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0x40e...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_identical = <Martel.Expression.Seq instance at 0x...
Group blastx = <Martel.Expression.Group instance at 0x40ecdd0c...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0x40e...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq db_stats = <Martel.Expression.Seq instance at 0x40e5c7ac...
Group expect = <Martel.Expression.Group instance at 0x40e4888c...
Group format = <Martel.Expression.Group instance at 0x40e8e3cc...
Seq frame = <Martel.Expression.Seq instance at 0x40e545ec>
Seq frameshift_info = <Martel.Expression.Seq instance at 0x4...
Seq gap_penalties_stats = <Martel.Expression.Seq instance at...
Seq gapped_lambda_stats = <Martel.Expression.Seq instance at...
Seq generic_info1 = <Martel.Expression.Seq instance at 0x40e...
Seq generic_info2 = <Martel.Expression.Seq instance at 0x40e...
Group header = <Martel.Expression.Group instance at 0x40e4830c...
Group hit = <Martel.Expression.Group instance at 0x40e5c50c>
Seq hit_descr = <Martel.Expression.Seq instance at 0x40e4880...
Seq hit_length = <Martel.Expression.Seq instance at 0x40e484...
Seq homology_line = <Martel.Expression.Seq instance at 0x40e...
Group hsp = <Martel.Expression.Group instance at 0x40e5c4cc>
Seq hsp_info = <Martel.Expression.Seq instance at 0x40e6f68c...
Group hsp_length = <Martel.Expression.Group instance at 0x40e4...
Seq lambda_stats = <Martel.Expression.Seq instance at 0x40e6...
Seq matrix_stats = <Martel.Expression.Seq instance at 0x40e6...
Group ncbi_version = <Martel.Expression.Group instance at 0x40...
Group num_bits = <Martel.Expression.Group instance at 0x40e488...
Group num_identical = <Martel.Expression.Group instance at 0x4...
Group num_positives = <Martel.Expression.Group instance at 0x4...
Seq query_database = <Martel.Expression.Seq instance at 0x40...
Group query_descr = <Martel.Expression.Group instance at 0x40e...
Seq query_letters = <Martel.Expression.Seq instance at 0x40e...
Seq query_line = <Martel.Expression.Seq instance at 0x40e54e...
Seq s1_info = <Martel.Expression.Seq instance at 0x40e8874c>
Seq s2_info = <Martel.Expression.Seq instance at 0x40e88e0c>
Seq score = <Martel.Expression.Seq instance at 0x40e4d2ec>
Seq spaces_line = <Martel.Expression.Seq instance at 0x40e7a...
Seq strand = <Martel.Expression.Seq instance at 0x40e54b0c>
Seq subject_line = <Martel.Expression.Seq instance at 0x40e5...
Seq t_info = <Martel.Expression.Seq instance at 0x40e6fbcc>
Group table = <Martel.Expression.Group instance at 0x40e4184c>
Group table_entry = <Martel.Expression.Group instance at 0x40e...
Group tblastn = <Martel.Expression.Group instance at 0x40edfa4...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_ending = <Martel.Expression.Seq instance at 0x40...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0x40e...
Group tblastx = <Martel.Expression.Group instance at 0x40eef78...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastx_ending = <Martel.Expression.Seq instance at 0x40...
Seq tblastx_frame = <Martel.Expression.Seq instance at 0x40e...
Seq tblastx_hsp_header = <Martel.Expression.Seq instance at ...
Group to_table = <Martel.Expression.Group instance at 0x40e414...
Seq ungapped_lambda_stats = <Martel.Expression.Seq instance ...
Seq x1_info = <Martel.Expression.Seq instance at 0x40e822ec>
Seq x2_info = <Martel.Expression.Seq instance at 0x40e829ac>
Seq x3_info = <Martel.Expression.Seq instance at 0x40e8808c>

Variable Details

a_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e8208c>                         

alignment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e5c3cc>                       

blast_filter

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0x40e6c44c>                         

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40ea02ac>                       

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e39b8c>                         

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e88e4c>                         

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5c32c>                         

blastn_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e4da0c>                         

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40ebcfcc>                       

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e39fcc>                         

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e88e6c>                         

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5c34c>                         

blastp_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e4d96c>                         

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40ecdd0c>                       

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e39ccc>                         

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e88ecc>                         

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5c22c>                         

db_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5c7ac>                         

expect

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e4888c>                       

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e8e3cc>                       

frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e545ec>                         

frameshift_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e6fa8c>                         

gap_penalties_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e66b6c>                         

gapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e60aac>                         

generic_info1

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e66ccc>                         

generic_info2

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e6f3ec>                         

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e4830c>                       

hit

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e5c50c>                       

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e4880c>                         

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e4844c>                         

homology_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e54f8c>                         

hsp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e5c4cc>                       

hsp_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e6f68c>                         

hsp_length

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e4898c>                       

lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e604cc>                         

matrix_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e664ac>                         

ncbi_version

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e6c86c>                       

num_bits

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e4884c>                       

num_identical

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e4890c>                       

num_positives

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e489ec>                       

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e412ac>                         

query_descr

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e7da6c>                       

query_letters

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e7da2c>                         

query_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e54e2c>                         

s1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e8874c>                         

s2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e88e0c>                         

score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e4d2ec>                         

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e7a80c>                         

strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e54b0c>                         

subject_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5c28c>                         

t_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e6fbcc>                         

table

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e4184c>                       

table_entry

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e4182c>                       

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40edfa4c>                       

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e7d74c>                         

tblastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e88ecc>                         

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5c36c>                         

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e4d4cc>                         

tblastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40eef78c>                       

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e7d86c>                         

tblastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e88e8c>                         

tblastx_frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5470c>                         

tblastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5c3ac>                         

to_table

Type:
Group
Value:
<Martel.Expression.Group instance at 0x40e414ac>                       

ungapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e5caac>                         

x1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e822ec>                         

x2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e829ac>                         

x3_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e8808c>                         

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