Trees | Index | Help |
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Package Bio :: Package expressions :: Package blast :: Module ncbiblast |
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Function Summary | |
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float_param(name)
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float_stat(name)
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int_param(name,
signed,
comma)
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int_stat(name,
signed,
comma)
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Number(name,
attrs)
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Variable Summary | |
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Seq |
a_info = <Martel.Expression.Seq instance at 0x40e8208c>
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Group |
alignment = <Martel.Expression.Group instance at 0x40e5c...
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Alt |
blast_filter = <Martel.Expression.Alt instance at 0x40e6...
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Group |
blastn = <Martel.Expression.Group instance at 0x40ea02ac...
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Seq |
blastn_appheader = <Martel.Expression.Seq instance at 0x...
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Seq |
blastn_ending = <Martel.Expression.Seq instance at 0x40e...
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Seq |
blastn_hsp_header = <Martel.Expression.Seq instance at 0...
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Seq |
blastn_identical = <Martel.Expression.Seq instance at 0x...
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Group |
blastp = <Martel.Expression.Group instance at 0x40ebcfcc...
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Seq |
blastp_appheader = <Martel.Expression.Seq instance at 0x...
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Seq |
blastp_ending = <Martel.Expression.Seq instance at 0x40e...
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Seq |
blastp_hsp_header = <Martel.Expression.Seq instance at 0...
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Seq |
blastp_identical = <Martel.Expression.Seq instance at 0x...
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Group |
blastx = <Martel.Expression.Group instance at 0x40ecdd0c...
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Seq |
blastx_appheader = <Martel.Expression.Seq instance at 0x...
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Seq |
blastx_ending = <Martel.Expression.Seq instance at 0x40e...
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Seq |
blastx_hsp_header = <Martel.Expression.Seq instance at 0...
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Seq |
db_stats = <Martel.Expression.Seq instance at 0x40e5c7ac...
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Group |
expect = <Martel.Expression.Group instance at 0x40e4888c...
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Group |
format = <Martel.Expression.Group instance at 0x40e8e3cc...
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Seq |
frame = <Martel.Expression.Seq instance at 0x40e545ec>
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Seq |
frameshift_info = <Martel.Expression.Seq instance at 0x4...
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Seq |
gap_penalties_stats = <Martel.Expression.Seq instance at...
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Seq |
gapped_lambda_stats = <Martel.Expression.Seq instance at...
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Seq |
generic_info1 = <Martel.Expression.Seq instance at 0x40e...
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Seq |
generic_info2 = <Martel.Expression.Seq instance at 0x40e...
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Group |
header = <Martel.Expression.Group instance at 0x40e4830c...
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Group |
hit = <Martel.Expression.Group instance at 0x40e5c50c>
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Seq |
hit_descr = <Martel.Expression.Seq instance at 0x40e4880...
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Seq |
hit_length = <Martel.Expression.Seq instance at 0x40e484...
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Seq |
homology_line = <Martel.Expression.Seq instance at 0x40e...
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Group |
hsp = <Martel.Expression.Group instance at 0x40e5c4cc>
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Seq |
hsp_info = <Martel.Expression.Seq instance at 0x40e6f68c...
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Group |
hsp_length = <Martel.Expression.Group instance at 0x40e4...
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Seq |
lambda_stats = <Martel.Expression.Seq instance at 0x40e6...
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Seq |
matrix_stats = <Martel.Expression.Seq instance at 0x40e6...
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Group |
ncbi_version = <Martel.Expression.Group instance at 0x40...
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Group |
num_bits = <Martel.Expression.Group instance at 0x40e488...
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Group |
num_identical = <Martel.Expression.Group instance at 0x4...
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Group |
num_positives = <Martel.Expression.Group instance at 0x4...
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Seq |
query_database = <Martel.Expression.Seq instance at 0x40...
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Group |
query_descr = <Martel.Expression.Group instance at 0x40e...
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Seq |
query_letters = <Martel.Expression.Seq instance at 0x40e...
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Seq |
query_line = <Martel.Expression.Seq instance at 0x40e54e...
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Seq |
s1_info = <Martel.Expression.Seq instance at 0x40e8874c>
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Seq |
s2_info = <Martel.Expression.Seq instance at 0x40e88e0c>
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Seq |
score = <Martel.Expression.Seq instance at 0x40e4d2ec>
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Seq |
spaces_line = <Martel.Expression.Seq instance at 0x40e7a...
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Seq |
strand = <Martel.Expression.Seq instance at 0x40e54b0c>
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Seq |
subject_line = <Martel.Expression.Seq instance at 0x40e5...
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Seq |
t_info = <Martel.Expression.Seq instance at 0x40e6fbcc>
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Group |
table = <Martel.Expression.Group instance at 0x40e4184c>
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Group |
table_entry = <Martel.Expression.Group instance at 0x40e...
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Group |
tblastn = <Martel.Expression.Group instance at 0x40edfa4...
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Seq |
tblastn_appheader = <Martel.Expression.Seq instance at 0...
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Seq |
tblastn_ending = <Martel.Expression.Seq instance at 0x40...
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Seq |
tblastn_hsp_header = <Martel.Expression.Seq instance at ...
|
Seq |
tblastn_score = <Martel.Expression.Seq instance at 0x40e...
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Group |
tblastx = <Martel.Expression.Group instance at 0x40eef78...
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Seq |
tblastx_appheader = <Martel.Expression.Seq instance at 0...
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Seq |
tblastx_ending = <Martel.Expression.Seq instance at 0x40...
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Seq |
tblastx_frame = <Martel.Expression.Seq instance at 0x40e...
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Seq |
tblastx_hsp_header = <Martel.Expression.Seq instance at ...
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Group |
to_table = <Martel.Expression.Group instance at 0x40e414...
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Seq |
ungapped_lambda_stats = <Martel.Expression.Seq instance ...
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Seq |
x1_info = <Martel.Expression.Seq instance at 0x40e822ec>
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Seq |
x2_info = <Martel.Expression.Seq instance at 0x40e829ac>
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Seq |
x3_info = <Martel.Expression.Seq instance at 0x40e8808c>
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Variable Details |
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a_info
|
alignment
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blast_filter
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blastn
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blastn_appheader
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blastn_ending
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blastn_hsp_header
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blastn_identical
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blastp
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blastp_appheader
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blastp_ending
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blastp_hsp_header
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blastp_identical
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blastx
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blastx_appheader
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blastx_ending
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blastx_hsp_header
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db_stats
|
expect
|
format
|
frame
|
frameshift_info
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gap_penalties_stats
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gapped_lambda_stats
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generic_info1
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generic_info2
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header
|
hit
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hit_descr
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hit_length
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homology_line
|
hsp
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hsp_info
|
hsp_length
|
lambda_stats
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matrix_stats
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ncbi_version
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num_bits
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num_identical
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num_positives
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query_database
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query_descr
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query_letters
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query_line
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s1_info
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s2_info
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score
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spaces_line
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strand
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subject_line
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t_info
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table
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table_entry
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tblastn
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tblastn_appheader
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tblastn_ending
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tblastn_hsp_header
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tblastn_score
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tblastx
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tblastx_appheader
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tblastx_ending
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tblastx_frame
|
tblastx_hsp_header
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to_table
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ungapped_lambda_stats
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x1_info
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x2_info
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x3_info
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Generated by Epydoc 2.1 on Sat Jul 16 15:49:02 2005 | http://epydoc.sf.net |