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Version 4.1.5 |
#include <seqpp/PhasedMTDMarkov.h>
Inheritance diagram for PhasedMTDMarkov:
Public Member Functions | |
template<class TSeq> | |
PhasedMTDMarkov (const TSeq &tseq, short mkv_order, short phase, short initial_phase=0, short nbseed=NBSEED, int nbiter_max=NBITERMAX, double eps=EPS, bool log=false) | |
Constructor 1 from a SequenceSet or a Sequence. | |
PhasedMTDMarkov (unsigned long **count, short size, short mtd_order, short mkv_order, short phase, short initial_phase=0, short nbseed=NBSEED, int nbiter_max=NBITERMAX, double eps=EPS, bool log=false) | |
Constructor 2 from a coded-word count. | |
void | estimate (unsigned long **count, bool decal_required, short mkv_order, short phase, short initial_phase, short nbseed, int nbiter_max, double eps, bool log) |
performs the estimation [used by each constructor] | |
~PhasedMTDMarkov () | |
Destructor. |
PhasedMTDMarkov is a PhasedMarkov object with a different estimation step. This object performs the estimation with the Mixture Transition Distribution algorithm and then transfoms, once per phase, the MTD model in a markovian matrix.
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Constructor 1 from a SequenceSet or a Sequence.
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Constructor 2 from a coded-word count.
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Contributors : M.Baudry, P.Y.Bourguignon, M.Hoebeke, V.Miele, P.Nicolas, G.Nuel, H.Richard, D.Robelin |